Last modified

Kimihito ITO

Kimihito ITO Kimihito ITO, PhD
Born in 1969
Computer Scientist, Bioinformatician and Virologist
Professor
Division of Bioinformatics
Hokkaido University Research Center for Zoonosis Control

Papers

  1. Sasaki M, Gonzalez G, Wada Y, Setiyono A, Handharyani E, Rahmadani I, Taha S, Adiani S, Latief M, Kholilullah ZA, Subangkit M, Kobayashi S, Nakamura I, Kimura T, Orba Y, Ito K, Sawa H: Divergent bufavirus harboured in megabats represents a new lineage of parvoviruses, Sci Rep, 6:24257,(2016)
  2. Kim K, Omori R, Ueno K, Iida S, Ito K: Host-Specific and Segment-Specific Evolutionary Dynamics of Avian and Human Influenza A Viruses: A Systematic Review, PLoS One, 11(1):e0147021,(2016)
  3. Sasaki M, Orba Y, Anindita PD, Ishii A, Ueno K, Hang'ombe BM, Mweene AS, Ito K, Sawa H: Distinct Lineages of Bufavirus in Wild Shrews and Nonhuman Primates, Emerg Infect Dis, 21(7):1230-3,(2015)
  4. Ogawa H, Miyamoto H, Nakayama E, Yoshida R, Nakamura I, Sawa H, Ishii A, Thomas Y, Nakagawa E, Matsuno K, Kajihara M, Maruyama J, Nao N, Muramatsu M, Kuroda M, Simulundu E, Changula K, Hang'ombe B, Namangala B, Nambota A, Katampi J, Igarashi M, Ito K, Feldmann H, Sugimoto C, Moonga L, Mweene A, Takada A: Seroepidemiological Prevalence of Multiple Species of Filoviruses in Fruit Bats (Eidolon helvum) Migrating in Africa, J Infect Dis, 212 Suppl 2:S101-8,(2015)
  5. Ozawa M, Matsuu A, Yonezawa K, Igarashi M, Okuya K, Kawabata T, Ito K, Tsukiyama-Kohara K, Taneno A, Deguchi E.: Efficient isolation of Swine influenza viruses by age-targeted specimen collection, J Clin Microbio, 53(4):1331-8,(2015)
  6. Ishii A, Ueno K, Orba Y, Sasaki M, Moonga L, Hang'ombe BM, Mweene AS, Umemura T, Ito K, Hall WW, Sawa H: A nairovirus isolated from African bats causes haemorrhagic gastroenteritis and severe hepatic disease in mice, Nat Commun, 5:5651,(2014)
  7. Sasaki M, Orba Y, Ueno K, Ishii A, Moonga L, Hang'ombe BM, Mweene AS, Ito K, Sawa H: Metagenomic analysis of shrew enteric virome reveals novel viruses related to human stool-associated viruses, J Gen Virol, 96(Pt 2):440-52,(2014)
  8. Ueno K, Ishii A, Ito K: ELM: enhanced lowest common ancestor based method for detecting a pathogenic virus from a large sequence dataset, BMC Bioinform, 28(15):254,(2014)
  9. Nakao R, Qiu Y, Igarashi M, Magona JW, Zhou L, Ito K, Sugimoto C: High prevalence of spotted fever group rickettsiae in Amblyomma variegatum from Uganda and their identification using sizes of intergenic spacers, Ticks Tick Borne Dis., 4(6):506-512,(2013)
  10. Muramatsu M, Yoshida R, Miyamoto H, Tomabechi D, Kajihara M, Maruyama J, Kimura T, Manzoor R, Ito K, Takada A: Heterosubtypic antiviral activity of hemagglutinin-specific antibodies induced by intranasal immunization with inactivated influenza viruses in mice., PLoS One, 8(8):e71534,(2013)
  11. Hayashida K, Abe T, Weir W, Nakao R, Ito K, Kajino K, Suzuki Y, Jongejan F, Geysen D, Sugimoto C: Whole-genome sequencing of Theileria parva strains provides insight into parasite migration and diversification in the African continent, DNA Res, 20(3):209-20,(2013)
  12. Motohashi Y, Igarashi M, Okamatsu M, Noshi T, Sakoda Y, Yamamoto N, Ito K, Yoshida R, Kida H: Antiviral activity of stachyflin on influenza A viruses of different hemagglutinin subtypes, Virol J, 10:118,(2013)
  13. Yonezawa K, Igarashi M, Ueno K, Takada A, Ito K: Resampling nucleotide sequences with closest-neighbor trimming and its comparison to other methods, PLoS ONE., 8(2):e57684,(2013)
  14. Takano R, Kiso M, Igarashi M, Le QM, Sekijima M, Ito K, Takada A, Kawaoka Y: Molecular mechanisms underlying oseltamivir resistance mediated by an I117V substitution in the neuraminidase of subtype H5N1 avian influenza A viruses, J Infect Dis., 207(1):89-97,(2013)
  15. Makino S, Shimada T, Hirata K, Yonezawa K, Ito K: A trim distance between positions as packaging signals in H3N2 influenza viruses, Joint 6th International Conference on Soft Computing and Intelligent Systems (SCIS) and 13th International Symposium on Advanced Intelligent Systems (ISIS) , 1702-1707,(2012)
  16. Shimada T, Hazemoto T, Makino S, Hirata K, Ito K: Finding correlated mutations among RNA segments in H3N2 influenza viruses, Joint 6th International Conference on Soft Computing and Intelligent Systems (SCIS) and 13th International Symposium on Advanced Intelligent Systems (ISIS) , 1696-1701,(2012)
  17. Muleya W, Namangala B, Simuunza M, Nakao R, Inoue N, Kimura T, Ito K, Sugimoto C, Sawa H: Population genetic analysis and sub-structuring of Theileria parva in the northern and eastern parts of Zambia, Parasit Vectors, 5:255,(2012)
  18. Makino S, Shimada T, Hirata K, Yonezawa K, Ito K: A trim distance between positions in nucleotide sequences, Discovery Science, Lecture Notes in Computer Science, 7569: 81-94,(2012)
  19. Hayashida K, Hara Y, Abe T, Yamasaki C, Toyoda A, Kosuge T, Suzuki Y, Sato Y, Kawashima S, Katayama T, Wakaguri H, Inoue N, Homma K, Tada-Umezaki M, Yagi Y, Fujii Y, Habara T, Kanehisa M, Watanabe H, Ito K, Gojobori T, Sugawara H, Imanishi T, Weir W, Gardner M, Pain A, Shiels B, Hattori M, Nene V, and Sugimoto C: Comparative genome analysis of three eukaryotic parasites with differing abilities to transform leukocytes reveals key mediators of theileria-induced leukocyte transformation, mBio, 3(5):e00204-12,(2012)
  20. Nakahara KS, Masuta C, Yamada S, Shimura H, Kashihara Y, Wada TS, Meguro A, Goto K, Tadamura K, Sueda K, Sekiguchi T, Shao J, Itchoda N, Matsumura T, Igarashi M, Ito K, Carthew RW, Uyeda I.: Tobacco calmodulin-like protein provides secondary defense by binding to and directing degradation of virus RNA silencing suppressors, Proc Natl Acad Sci U S A., 109(25):10113-8,(2012)
  21. Ueno K, Mineta K, Ito K, Endo T: Exploring functionally related enzymes using radially distributed properties of active sites around the reacting points of bound ligands., BMC Struct Biol., 12(5),(2012)
  22. Yoshii K, Igarashi M, Ichii O, Yokozawa K, Ito K, Kariwa H, Takashima I: A conserved region in the prM protein is a critical determinant in the assembly of flavivirus particles, J. Gen. Virol., 93(Pt 1):27-38,(2012)
  23. Sasaki M, Kim E, Igarashi M, Ito K, Hasebe R, Fukushi H, Sawa H, Kimura T : Single amino acid residue in the A2 domain of major histocompatibility complex class I is involved in the efficiency of equine herpesvirus-1 entry, J. Biol. Chem., 286(45): 39370-39378,(2011)
  24. Ito K, Igarashi M, Miyazaki Y, Murakami T, Iida S, Kida H, Takada A: Gnarled-Trunk Evolutionary Model of Influenza A Virus Hemagglutinin, PLoS ONE., 6(10): e25953,(2011)
  25. Kajihara M, Matsuno K, Simulundu E, Muramatsu M, Noyori O, Manzoor R, Nakayama E, Igarashi M, Tomabechi D, Yoshida R, Okamatsu M, Sakoda Y, Ito K, Kida H, Takada A : An H5N1 highly pathogenic avian influenza virus that invaded Japan through waterfowl migration, Jpn. J. Vet. Res., 59(2-3): 89-100,(2011)
  26. Simulundu E, Ishii A, Igarashi M, Mweene AS, Suzuki Y, Hang'ombe BM, Namangala B, Moonga L, Manzoor R, Ito K, Nakamura I, Sawa H, Sugimoto C, Kida H, Simukonda C, Chansa W, Chulu J, Takada A: Characterization of influenza A viruses isolated from wild waterfowl in Zambia, J. Gen. Virol., 92(Pt 6): 1416-1427.,(2011)
  27. Samad RAA, Sakoda Y, Tsuda Y, Simulundu E, Manzoor R, Okamatsu M, Ito K, Kida H: Virological surveillance and phylogenetic analysis of the PB2 genes of influenza viruses isolated from wild water birds flying from their nesting lakes in Siberia to Hokkaido, Japan in autumn, Jpn. J. Vet. Res. , 59(1): 15-22,(2011)
  28. Yoshii K, Igarashi M, Ito K, Kariwa H, Holbrook MR, Takashima I: Construction of an infectious cDNA clone for Omsk hemorrhagic fever virus, and characterization of mutations in NS2A and NS5, Virus Research, 155(1): 61-68,(2011)
  29. Ogawa H, Miyamoto H, Ebihara H, Ito K, Morikawa S, Feldmann H, Takada A: Detection of all known filovirus species by reverse transcription-polymerase chain reaction using a primer set specific for the viral nucleoprotein gene, J. Virol. Methods, 171(1): 310-313,(2011)
  30. Uchida Y, Kanehira K, Mase M, Takemae N, Watanabe C, Usui T, Fujimoto Y, Ito T, Igarashi M, Ito K, Takada A, Sakoda Y, Okamatsu M, Yamamoto Y, Nakamura K, Kida H, Hiromoto Y, Tsuda T, Saito T: Genetic characterization and susceptibility on poultry and mammal of H7N6 subtype avian influenza virus isolated in Japan in 2009, Vet. Microbiol., 147(1-2): 1-10,(2011)
  31. Nakayama E, Yokoyama A, Miyamoto H, Igarashi M, Kishida N, Matsuno K, Marzi A, Feldmann H, Ito K, Saijo M, Takada A: Enzyme-linked immunosorbent assay for the detection of filovirus species-specific antibodies, Clin Vaccine Immunol., 17(11): 1723-1728,(2010)
  32. Ito K, Zeugmann T, Zhu Y: Clustering the normalized compression distance for influenza virus data, Lect. Notes Comput. Sc. , 6060: 130-146,(2010)
  33. Watanabe Y, Hiraoka W, Igarashi M, Ito K, Shimoyama Y, Horiuchi M, Yamamori T, Yasui H, Kuwabara M, Inagaki F, Inanami O: A novel copper(II) coordination at His186 in full-length murine prion protein, Biochem Biophys Res Commun, 394(3):522-528,(2010)
  34. Igarashi M, Ito K, Yoshida R, Tomabechi D, Kida H, Takada A: Predicting the antigenic structure of the pandemic (H1N1) 2009 influenza virus hemagglutinin, PLoS ONE, 5(1): e8553,(2010)
  35. Yanagihashi F, Ito K, Arimura H: Inference of geographic transmission probability of influenza viruses from a large phylogenetic tree, Proceedings of the 20th International Conference on Genome Informatics (GIW2009), Poster Tracks 25,(2009)
  36. Sata K, Hirata K, Ito K, Kuboyama T: Discovering networks for global propagation of influenza A (H3N2) viruses by clustering, Lect. Notes Comput. Sc., 5712: 490-497,(2009)
  37. Simulundu E, Mweene AS, Tomabechi D, Hang'ombe BM, Ishii A, Suzuki Y, Nakamura I, Sawa H, Sugimoto C, Ito K, Kida H, Saiwana L, Takada A: Characterization of H3N6 avian influenza virus isolated from a wild white pelican in Zambia, Arch Virol. , 54(9):1517-1522,(2009)
  38. Ito K, Zeugmann T, Zhu Y: Clustering the normalized compression distance for virus data, Proceedings of the 6th Workshop on Learning with Logics and Logics for Learning (LLLL 2009), 56-67,(2009)
  39. Yoshida R, Igarashi M, Ozaki H, Kishida N, Tomabechi D, Kida H, Ito K, Takada A: Cross-protective potential of a novel monoclonal antibody directed against antigenic site B of the hemagglutinin of influenza A viruses, PLoS Pathog., 5(3) e1000350.,(2009)
  40. Igarashi M, Ito K, Kida H, Takada A: Genetically destined potentials for N-linked glycosylation of influenza virus hemagglutinin, Virology, 376(2):323-329,(2008)
  41. Igarashi M, Ito K, Kida H, Takada A: Genetically destined potentials for N-linked glycosylation associated with antigenic changes of influenza virus hemagglutinin. , Options for the control of influenza, VI, 405-407,(2008)
  42. Minato S, Ito K: Symmetric item set mining method using zero-suppressed BDDs and application to biological data, Trans.JSAI., 22:156-164,(2007)
  43. Tanaka Y, Ito K, Fujima J: Meme media for clipping and combining web resources, World Wide Web, 9:117-142,(2006)
  44. Ito K: A meme media framework for introducing multimodal user interface to existing web applications, Frontiers in Artificial Intelligence and Applications, 136: 83-93,(2006)
  45. Ito K: Introducing multimodal user interface to exixiting web applications, Proceedings of the 14th International World Wide Web Conference (WWW2005), Poster Tracks 182,(2005)
  46. Ito K: Meme media and logic programming approach for intelligent media systems, Proceedings of the 2005 International Conference on Active Media Technology (AMT2005), 611-616,(2005)
  47. Tanaka Y, Ito K: Meme media architecture for the reediting and redistribution of Web resources, Lect. Notes Comput. Sc., 3055: 1-12 (Invited Paper),(2004)
  48. Doetsch V, Ito K, Jantke KP: Human-agent co-operation in accessing and communicating knowledge media- A case in medical therapy planning, Lect. Notes Comput. Sc., 3359: 68-87,(2004)
  49. Tanaka Y, Ito K, Kurosaki D: Meme media architectures for re-editing and redistributing intellectual assets over the Web, Int. J. Hum. Comput. Stud., 60(4): 489-526,(2004)
  50. Ito K, Tanaka Y: Web application wrapping by demonstration, Frontiers in Artificial Intelligence and Applications, 105:284-299,(2003)
  51. Ito K, Tanaka Y: A visual environment for web application composition, Proceedings of the 14th ACM Conference on Hypertext and Hypermedia (HyperText 03), 184-193,(2003)
  52. Ito K, Sugibuchi T, Fujita Y, Oda T, Ohigashi M, Tanaka Y: Integrated visualization and reification of database and web contents, Proceedings of the 12th International World Wide Web Conference (WWW2003), Poster Tracks 182,(2003)
  53. Ito K, Tanaka Y: Visual wrapping and functional linkage of web applications, Proceedings of Emerging Applications for Wireless and Mobile Access, ,(2003)
  54. Tanaka Y, Kurosaki D, Ito K: Live document framework for reediting and redistributing contents in WWW, Frontiers in Artificial Intelligence and Applications, 94:247-262,(2002)
  55. Ito K, Tanaka Y: Visual wrapping and composition of web applications for their interoperations, Proceedings of the 11th International World Wide Web Conference (WWW2002), Poster Tracks 64,(2002)
  56. Yamamoto A, Ito K, Ishino A, Arimura H: Modelling semi-structured documents with hedges for deduction and induction, Lect. Notes Artif. Int., 2157: 240-247,(2001)
  57. 伊藤公人, 田中譲: GUI部品とWebサービスの統合による分散アプリケーションの構築手法, インタラクティブシステムとソフトウェアIX, 137-142. 近代科学社,(2001)
  58. 伊藤公人, 山本章博: スキーマと質問を用いた述語発見による論理プログラムの構成的学習アルゴリズム, 人工知能学会誌, 14(4): 679-688,(1999)
  59. 伊藤公人, 山本章博: 底節の最小汎化に基づく仮説の発見手法, 人工知能学会誌, 14(4): 709-716,(1999)
  60. Ito K, Yamamoto A: Finding hypotheses from examples by computing the least generalization of bottom clauses, Lect. Notes Comput. Sc., 1532: 303-314,(1998)
  61. Ito K, Yamamoto A: Polynomial-time MAT learning of multilinear logic programs, Lect. Notes Artif. Int., 743: 63-74,(1993)

Review, Book, etc

  1. 渡邉真治,伊藤公人: インフルエンザの流行予測はどこまで可能か?, 感染症, 46巻1号,13-23,(2016)
  2. 伊藤公人: 計算機科学によるインフルエンザウイルスの抗原変異予測, 化学療法の領域, 30巻12号,68-74,(2014)
  3. 伊藤公人: 自然界から見る人獣共通感染症, みんぱく, 38巻11号,4-5,(2014)
  4. 伊藤公人: インフルエンザウイルスの変異予測, 感染・炎症・免疫, 42巻4号, 54-56,(2013)
  5. 伊藤公人: 数理科学はインフルエンザウイルスの変異を予測できるか?, 応用数理, 22巻3号: 15-17,(2012)
  6. 伊藤公人, 高田礼人: ウイルスはどうやって生き延びているのか??インフルエンザウイルスの存続様式と進化, 遺伝, 66巻4号,(2012)
  7. 伊藤公人: バイオインフォマティクスによるインフルエンザウイルスの変異予測, 最新医学, 66(12): 2632-2640,(2011)
  8. 伊藤公人: インフルエンザウイルスの抗原変異とバイオインフォマティクス, ウイルス, 61(1): 3-13,(2011)
  9. Igarashi M, Ito K, Yoshida R, Tomabechi D, Kida H and Takada A: Prediction of the antigenic changes of the pandemic (H1N1) 2009 influenza virus hemagglutinin, Influenza and other respiratory viruses, 5 (supple. 1), 402-404.,(2011)
  10. 伊藤公人, 高田礼人: インフルエンザウイルスの抗原変異予測とワクチン, VIRUS REPORT, 6(2): 60-68,(2009)
  11. 五十嵐学, 伊藤公人, 高田礼人: バイオインフォマティクスを用いたインフルエンザウイルスヘマグルチニンの糖鎖付加ポテンシャルの予測, Glycomicrobiology Now, http//www.glycoforum.gr.jp/science/glycomicrobiology/glycoinfeJ.html,(2009)
  12. Igarashi M, Ito K, Takada A: Prediction of N-glycosylation potential of influenza virus hemagglutinin by a bioinformatic approach, Glycomicrobiology Now, http://www.glycoforum.gr.jp/science/glycomicrobiology/glycoinfeE.html,(2009)
  13. Ito K and Tanaka Y: A visual environment for DOM-based wrapping and client-side linkage of web application, Intellectual Property Protection for Multimedia Information Technology, Sasaki, H. eds., Information Science Reference, IGI Global, Hershey, PA : 219-240,(2008)
  14. Lamonova N, Ito K and Tanaka Y: From planning tools to intelligent assistants: meme media and logic programming technologies, Intelligent Assistant Systems: Concepts, Techniques and Technologies, Kaschek, R. eds., Idea Group, Inc., Hershey, PA:170-182,(2007)
  15. Ito K: Building intelligent multimodal assistants based on logic programming in the meme media architecture, Intelligent Assistant Systems: Concepts, Techniques and Technologies, Kaschek, R. eds., Idea Group, Inc., Hershey, PA: 146-169,(2007)
  16. Ito K, Igarashi M and Takada A: Data mining in amino acid sequences of H3N2 influenza viruses isolated during 1968 to 2006, Knowledge Media Technologies, pp. 154-158, Jantke, P.K. and Kreuzberger, G. eds., TU Ilmenau: 154-158,(2006)
  17. 伊藤公人: ウェブに公開されているサービスをキャラクタのガイドで気軽に活用する, 感じる・楽しむ・創りだす 感性情報学, 176. 工学舎,(2004)

Links